Structure of PDB 5e08 Chain L

Receptor sequence

>5e08L (length=215) Species: 9606 (Homo sapiens) [Search protein sequence]

SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIY
SASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYSYPYTFG
QGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWK
VDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ
GLSSPVTKSFNRGEC

3D structure

PDB

5e08 Specific Recognition of a Single-Stranded RNA Sequence by a Synthetic Antibody Fragment.

Chain

Resolution

2.38 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	L	Y50 S51 S54 Y56	Y50 S51 S54 Y56	PDBbind-CN: Kd=10nM

External links

PDB	RCSB:5e08, PDBe:5e08, PDBj:5e08
PDBsum	5e08
PubMed	27593161

[Back to BioLiP]