Structure of PDB 5dm7 Chain L

Receptor sequence
>5dm7L (length=104) Species: 1299 (Deinococcus radiodurans) [Search protein sequence]
RRKLRTRRKVRTTTAASGKLRLSVYRSSKHIYAQIIDDSRGQTLAAASSA
ALKSGNKTDTAAAVGKALAAAAAEKGIKQVVFDRGSYKYHGRVKALADAA
REGG
3D structure
PDB5dm7 Crystallographic characterization of the ribosomal binding site and molecular mechanism of action of Hygromycin A.
ChainL
Resolution3.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna L L11 R14 R15 R18 F89 R91 Y96 L4 R7 R8 R11 F82 R84 Y89
BS02 rna L K16 R28 Y32 S34 S35 H37 Y39 Q41 G48 Q49 T50 A53 S55 A57 A58 K64 T65 K95 H97 R99 K9 R21 Y25 S27 S28 H30 Y32 Q34 G41 Q42 T43 A46 S48 A50 A51 K57 T58 K88 H90 R92
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0008097 5S rRNA binding
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:5dm7, PDBe:5dm7, PDBj:5dm7
PDBsum5dm7
PubMed26464437
UniProtQ9RSL2|RL18_DEIRA Large ribosomal subunit protein uL18 (Gene Name=rplR)

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