Structure of PDB 4d5l Chain L

Receptor sequence

>4d5lL (length=146) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

ADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAI
EGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNR
FEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTK

3D structure

PDB

4d5l Cryo-Em of Ribosomal 80S Complexes with Termination Factors Reveals the Translocated Cricket Paralysis Virus Ires.

Chain

Resolution

9.0 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	L	K12 F17 Q18 K21 K58 K59 S67 R69 G70 R71 K79 K81 M82 R84 Y92 R97 K98 Y99 K104 R105 H106 K107 N108 E130 R132 P133 L134 S135 K136 T137	K11 F16 Q17 K20 K57 K58 S66 R68 G69 R70 K78 K80 M81 R83 Y91 R96 K97 Y98 K103 R104 H105 K106 N107 E129 R131 P132 L133 S134 K135 T136

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005634	nucleus
GO:0005730	nucleolus
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0022626	cytosolic ribosome
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:4d5l, PDBe:4d5l, PDBj:4d5l
PDBsum	4d5l
PubMed	25601755
UniProt	G1TRM4\|RS11_RABIT Small ribosomal subunit protein uS17 (Gene Name=RPS11)