Structure of PDB 3jcd Chain L

Receptor sequence

>3jcdL (length=143) Species: 83333 (Escherichia coli K-12) [Search protein sequence]

RLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFE
GGQMPLYRRLPKFGFTSRKAAITAEIRLSDLAKVEGGVVDLNTLKAANII
GIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE

3D structure

PDB

3jcd EF4 disengages the peptidyl-tRNA CCA end and facilitates back-translocation on the 70S ribosome

Chain

Resolution

3.7 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	L	N4 P8 G11 S12 K13 K14 G16 K17 R18 L19 G20 R21 G22 I23 G24 K29 T30 G32 R33 G34 H35 K36 G37 Q38 K39 R41 G43 V46 R47 R48 F50 E51 G53 Q54 M55 Y58 R59 R60 K63 F64 G65 F66 T67 S68 R69 K70 A71 E76 R78 N99 Q104 K109 L112 R126 T128	N3 P7 G10 S11 K12 K13 G15 K16 R17 L18 G19 R20 G21 I22 G23 K28 T29 G31 R32 G33 H34 K35 G36 Q37 K38 R40 G42 V45 R46 R47 F49 E50 G52 Q53 M54 Y57 R58 R59 K62 F63 G64 F65 T66 S67 R68 K69 A70 E75 R77 N98 Q103 K108 L111 R125 T127

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome
GO:0005515	protein binding
GO:0019843	rRNA binding

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0015934	large ribosomal subunit
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:3jcd, PDBe:3jcd, PDBj:3jcd
PDBsum	3jcd
PubMed	26809121
UniProt	P02413\|RL15_ECOLI Large ribosomal subunit protein uL15 (Gene Name=rplO)