Structure of PDB 8pdr Chain K

Receptor sequence
>8pdrK (length=351) Species: 694067 (Human metapneumovirus CAN97-83) [Search protein sequence]
DLSYKHAILKESQYTIKRDVGTTTAVTPSSLQQEITLLCGEILYAKHADY
KYAAEIGIQYISTALGSERVQQILRNSGSEVQVVLTRTYSLGKIKNNKGE
DLQMLDIHGVEKSWVEEIDKEARKTMATLLKESSGNIPQNQRPSAPDTPI
ILLCVGALIFTKLASTIEVGLETTVRRANRVLSDALKRYPRMDIPKIARS
FYDLFEQKVYHRSLFIEYGKALGSSSTGSKAESLFVNIFMQAYGAGQTML
RWGVIARSSNNIMLGHVSVQAELKQVTEVYDLVREMGPESGLLHLRQSPK
AGLLSLANCPNFASVVLGNASGLGIIGMYRGRVPNTELFSAAESYAKSLK
E
3D structure
PDB8pdr Structure of the N-RNA/P interface indicates mode of L/P recruitment to the nucleocapsid of human metapneumovirus.
ChainK
Resolution4.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide K Y53 I103 R132 K133 M135 R151 S153 Y44 I94 R123 K124 M126 R142 S144
BS02 rna K K171 A173 S174 R185 R186 R189 G255 T257 W261 S314 I334 M337 Y338 R339 K162 A164 S165 R176 R177 R180 G246 T248 W252 S305 I325 M328 Y329 R330
Gene Ontology
Cellular Component
GO:0019013 viral nucleocapsid
GO:0019029 helical viral capsid
GO:0030430 host cell cytoplasm
GO:1990904 ribonucleoprotein complex

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Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:8pdr, PDBe:8pdr, PDBj:8pdr
PDBsum8pdr
PubMed37993464
UniProtQ6WBA1|NCAP_HMPVC Nucleoprotein (Gene Name=N)

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