Structure of PDB 8kcb Chain K

Receptor sequence
>8kcbK (length=486) Species: 3702 (Arabidopsis thaliana) [Search protein sequence]
ETVIKLQNELCPLLTGGQLKSYQLKGVKWLISLWQNGLNGILADQMGLGK
TIQTIGFLSHLKGNGLDGPYLVIAPLSTLSNWFNEIARFTPSINAIIYHG
DKNQRDELRRKHMPKTVGPKFPIVITSYEVAMNDAKRILRHYPWKYVVID
EGHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNNLSELWSLLNFILPDI
FTSHDEFESWFEKRRAQVVSKLHGILRPFILRRMKCDVELSLPRKKEIIM
YATMTDHQKKFQEHLLVIQLRKNCNHPDLLQGQIDGSYLYPPVEEIVGQC
GKFRLLERLLVRLFANNHKVLIFSQWTKLLDIMDYYFSEKGFEVCRIDGS
VKLDERRRQIKDFSDEKSSCSIFLLSTRAGGLGINLTAADTCILYDSDWN
PQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIETRVLKRAYSKLKLEHVVE
DKLIQTDISDADLDRLLDRSDLTFPVKGPGWEVVLP
3D structure
PDB8kcb Mechanism of heterochromatin remodeling revealed by the DDM1 bound nucleosome structures.
ChainK
Resolution3.17 Å
3D
structure
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Interaction with ligand
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003678 DNA helicase activity
GO:0004386 helicase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016787 hydrolase activity
GO:0016887 ATP hydrolysis activity
Biological Process
GO:0006338 chromatin remodeling
GO:0006346 DNA methylation-dependent heterochromatin formation
GO:0009294 DNA-mediated transformation
GO:0031507 heterochromatin formation
GO:0032197 retrotransposition
GO:0032508 DNA duplex unwinding
GO:0040029 epigenetic regulation of gene expression
Cellular Component
GO:0000786 nucleosome
GO:0005634 nucleus

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8kcb, PDBe:8kcb, PDBj:8kcb
PDBsum8kcb
PubMed38870940
UniProtQ9XFH4|DDM1_ARATH ATP-dependent DNA helicase DDM1 (Gene Name=DDM1)

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