Structure of PDB 8efy Chain K

Receptor sequence
>8efyK (length=304) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
EDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGK
TTLAHVIAHELGVNLRVTSGPAIPGDLAAILANSLEEGDILFIDEIHRLS
RQAEEHLYPAMEDFVMRTIRLELPRFTLIGATTRPGLITAPLLSRFGIVE
HLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRR
VRDFAQVAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGG
PVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVATELAYRHLG
YPPP
3D structure
PDB8efy Structure of double homo-hexameric AAA+ ATPase RuvB motor binding with DNA substrate
ChainK
Resolution3.16 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 3.6.4.12: DNA helicase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna K R101 R104 R147 R300 R98 R101 R134 R287
BS02 dna K Q105 V265 G266 P299 R300 Q102 V252 G253 P286 R287
BS03 AGS K R7 Y14 I15 P47 G48 L49 G50 T53 M204 R205 R6 Y13 I14 P46 G47 L48 G49 T52 M191 R192
BS04 MG K E98 H100 T146 E95 H97 T133
Gene Ontology
Molecular Function
GO:0000400 four-way junction DNA binding
GO:0003677 DNA binding
GO:0005524 ATP binding
GO:0009378 four-way junction helicase activity
GO:0016787 hydrolase activity
GO:0016887 ATP hydrolysis activity
Biological Process
GO:0006281 DNA repair
GO:0006310 DNA recombination
GO:0032508 DNA duplex unwinding
Cellular Component
GO:0005737 cytoplasm
GO:0048476 Holliday junction resolvase complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8efy, PDBe:8efy, PDBj:8efy
PDBsum8efy
PubMed
UniProtQ5SL87|RUVB_THET8 Holliday junction branch migration complex subunit RuvB (Gene Name=ruvB)

[Back to BioLiP]