Structure of PDB 7x3w Chain K
Receptor sequence
>7x3wK (length=504) Species:
559292
(Saccharomyces cerevisiae S288C) [
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DLEGTTKRFEHLLSLSGLFKHFIESKADPKFRQVLDVLEENQFRESPAYV
NGQLRPYQIQGVNWLVSLHKNKIAGILADEMGLGKTLQTISFLGYLRYIE
KIPGPFLVIAPKSTLNNWLREINRWTPDVNAFILQGDKEERAELIQKKLL
GCDFDVVIASYEIIIREKSPLKKINWEYIIIDEAHRIKNEESMLSQVLRE
FTSRNRLLITGTPLQNNLHELWALLNFLLPDIFSDAQDFDDWFSSESTEE
DQDKIVKQLHTVLQPFLLRRIKSDVETSLLPKKELNLYVGMSSMQKKWYK
KILEKDESKTRLLNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVYNAAK
LQVLDKLLKKLKEEGSRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTA
HEDRIQAIDDYNAPDSKKFVFLLTTRAGGLGINLTSADVVVLYDSDWNPQ
ADLQAMDRAHRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQLVIQQ
NRTS
3D structure
PDB
7x3w
ISW1-N1 nucleosome
Chain
K
Resolution
3.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number
3.6.4.-
Interaction with ligand
Site
#
Ligand
Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01
dna
K
R328 S334 M335 M469 W600 N601 K643
R186 S192 M193 M316 W447 N448 K490
BS02
dna
K
K254 R283 E304 R308 L466 K474 S528 G550 S551 R557 T577 R579 A580
K112 R141 E162 R166 L313 K321 S375 G397 S398 R404 T424 R426 A427
BS03
ADP
K
Q195 R197 Q200 G224 G226 K227 T228 L229 N586 R614 I615
Q53 R55 Q58 G82 G84 K85 T86 L87 N433 R461 I462
BS04
BEF
K
M223 G224 K227 G584 R614
M81 G82 K85 G431 R461
BS05
MG
K
G226 K227 T228
G84 K85 T86
Gene Ontology
Molecular Function
GO:0000182
rDNA binding
GO:0000976
transcription cis-regulatory region binding
GO:0003677
DNA binding
GO:0003730
mRNA 3'-UTR binding
GO:0004386
helicase activity
GO:0005515
protein binding
GO:0005524
ATP binding
GO:0008094
ATP-dependent activity, acting on DNA
GO:0016787
hydrolase activity
GO:0016887
ATP hydrolysis activity
GO:0031491
nucleosome binding
GO:0140658
ATP-dependent chromatin remodeler activity
Biological Process
GO:0001178
regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0006325
chromatin organization
GO:0006338
chromatin remodeling
GO:0006354
DNA-templated transcription elongation
GO:0006355
regulation of DNA-templated transcription
GO:0006363
termination of RNA polymerase I transcription
GO:0006369
termination of RNA polymerase II transcription
GO:0007062
sister chromatid cohesion
GO:0009408
response to heat
GO:0045944
positive regulation of transcription by RNA polymerase II
GO:0046832
negative regulation of RNA export from nucleus
GO:1902275
regulation of chromatin organization
GO:1903895
negative regulation of IRE1-mediated unfolded protein response
Cellular Component
GO:0005634
nucleus
GO:0016587
Isw1 complex
GO:0030874
nucleolar chromatin
GO:0036436
Isw1a complex
GO:0036437
Isw1b complex
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:7x3w
,
PDBe:7x3w
,
PDBj:7x3w
PDBsum
7x3w
PubMed
38177688
UniProt
P38144
|ISW1_YEAST ISWI chromatin-remodeling complex ATPase ISW1 (Gene Name=ISW1)
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