Structure of PDB 6s6y Chain K

Receptor sequence
>6s6yK (length=265) Species: 419610 (Methylorubrum extorquens PA1) [Search protein sequence]
STLRLRGDLPERVDLLNITPLALSGLSETEAGKLAIGTSRRGLTLGDVFE
IRLDGSDSLVIEGGSARLDRVGAALSQGSIRVEGDVGQRLGEGMAAGTLT
VTGSAGPYAGTGATGGTITIEGDAGDHAGGAVYAAKAGLDGATLVIKGAA
GDHLGDRMRRGMILAGSAGAFAASRMIAGTIVVSGALGDHPGYGMRRGTL
IAGSHGTLLPTFVETGTPDLVFVRLLAQSLKHLGAAQANLLSGTLRRYSG
DLATLGKGELFVPAH
3D structure
PDB6s6y Methylofuran is a prosthetic group of the formyltransferase/hydrolase complex and shuttles one-carbon units between two active sites.
ChainK
Resolution3.1 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GLU K R197 R198 R196 R197
BS02 GLU K R160 R161 R159 R160
BS03 DGL K R161 G180 R160 G179
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 16 16:48:04 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6s6y', asym_id = 'K', title = 'Methylofuran is a prosthetic group of the formyl...ttles one-carbon units between two active sites. '
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6s6y', asym_id='K', title='Methylofuran is a prosthetic group of the formyl...ttles one-carbon units between two active sites. ')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0015948,0016491,0018493,0046914', uniprot = '', pdbid = '6s6y', asym_id = 'K'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0015948,0016491,0018493,0046914', uniprot='', pdbid='6s6y', asym_id='K')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>