Structure of PDB 3ube Chain K

Receptor sequence
>3ubeK (length=320) Species: 641501 (Influenza A virus (A/California/04/2009(H1N1))) [Search protein sequence]
PGDTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCKLRGVA
PLHLGKCNIAGWILGNPECASSWSYIVETPSSDNGTCYPGDFIDYEELRE
QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVK
KGNSYPKLSKSYINDKGKEVLVLWGIHHPSTSADQQSLYQNADTYVFVCS
SRYSKKFKPEIAICPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRY
AFAMERNAGSGIIISDTPVHDCNTTCQTPKGAINTSLPFQNIHPITIGKC
PKYVKSTKLRLATGLRNIPS
3D structure
PDB3ube Structural Characterization of the Hemagglutinin Receptor Specificity from the 2009 H1N1 Influenza Pandemic.
ChainK
Resolution2.15 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GAL K K222 D225 K216 D219
BS02 SIA K Y98 V135 T136 A137 K145 H183 L194 Q226 Y88 V129 T130 A131 K139 H177 L188 Q220
Gene Ontology
Molecular Function
GO:0046789 host cell surface receptor binding
Biological Process
GO:0019064 fusion of virus membrane with host plasma membrane
Cellular Component
GO:0019031 viral envelope

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:3ube, PDBe:3ube, PDBj:3ube
PDBsum3ube
PubMed22072785
UniProtC3W5S1

[Back to BioLiP]