Structure of PDB 6hcf Chain J3

Receptor sequence
>6hcfJ3 (length=170) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]
KENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTV
RSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGF
GIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRI
SKEEAMRWFQQKYDGIILPG
3D structure
PDB6hcf ZNF598 Is a Quality Control Sensor of Collided Ribosomes.
ChainJ3
Resolution3.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna J3 K19 N23 C25 S51 R54 F60 N97 N98 D101 T102 F107 G108 G127 L128 D129 Y131 K12 N16 C18 S44 R47 F53 N90 N91 D94 T95 F100 G101 G120 L121 D122 Y124
BS02 rna J3 N10 M12 Q46 T47 V49 C72 R75 K144 C150 I151 K154 N3 M5 Q39 T40 V42 C65 R68 K137 C143 I144 K147
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6hcf, PDBe:6hcf, PDBj:6hcf
PDBsum6hcf
PubMed30293783
UniProtG1TUB8|RL11_RABIT Large ribosomal subunit protein uL5 (Gene Name=RPL11)

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