Structure of PDB 6sgc Chain J2

Receptor sequence

>6sgcJ2 (length=170) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

KENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTV
RSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGF
GIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRI
SKEEAMRWFQQKYDGIILPG

3D structure

PDB

6sgc Mechanism of ribosome stalling during translation of a poly(A) tail.

Chain

Resolution

2.8 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	J2	K19 C21 N23 C25 G27 S51 A53 F60 I62 N97 N98 S100 D101 T102 G106 F107 G108 G127 D129 Y131	K12 C14 N16 C18 G20 S44 A46 F53 I55 N90 N91 S93 D94 T95 G99 F100 G101 G120 D122 Y124
BS02	rna	J2	N10 M12 R13 Q46 T47 V49 C72 T73 R75 P137 G138 S140 I141 K144 K145 C150 I151 G152 K154 H155	N3 M5 R6 Q39 T40 V42 C65 T66 R68 P130 G131 S133 I134 K137 K138 C143 I144 G145 K147 H148
BS03	rna	J2	T56 R58	T49 R51

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005634	nucleus
GO:0005730	nucleolus
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:6sgc, PDBe:6sgc, PDBj:6sgc
PDBsum	6sgc
PubMed	31768042
UniProt	G1TUB8\|RL11_RABIT Large ribosomal subunit protein uL5 (Gene Name=RPL11)

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