Structure of PDB 9bkd Chain J

Receptor sequence
>9bkdJ (length=129) Species: 9606 (Homo sapiens) [Search protein sequence]
VRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFE
IIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGF
IVLTTSAGIMDHEEARRKHTGGKILGFFF
3D structure
PDB9bkd Human tumor suppressor protein Pdcd4 binds at the mRNA entry channel in the 40S small ribosomal subunit.
ChainJ
Resolution2.6 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna J V2 R3 M4 V6 N16 K19 R20 K22 R28 S31 K32 R57 A58 K60 K71 V74 S76 R78 D80 Q82 K88 W89 T105 T106 S107 I110 H120 G122 K124 V1 R2 M3 V5 N15 K18 R19 K21 R27 S30 K31 R56 A57 K59 K70 V73 S75 R77 D79 Q81 K87 W88 T104 T105 S106 I109 H119 G121 K123
External links
PDB RCSB:9bkd, PDBe:9bkd, PDBj:9bkd
PDBsum9bkd
PubMed39117603
UniProtP62244|RS15A_HUMAN Small ribosomal subunit protein uS8 (Gene Name=RPS15A)

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