Structure of PDB 9bcu Chain J

Receptor sequence
>9bcuJ (length=645) Species: 311400 (Thermococcus kodakarensis) [Search protein sequence]
RETFVDDILKEIREIIVQMVPREAGITDVEFEGPELVIYVKNPEAMMKDG
ELIKNLAKVLKKRISVRPDPDILLPPEKAEELIKQLVPPEAEITNISFDP
SVGEVLIEARKPGLVIGKNGETLRLITQKVHWAPRVVRTPPIQSQTIYSI
RSILQTESKDRRKFLRQVGRNIYRKSEYKSRWIRITGLGGFREVGRSALL
VQTDESYVLVDFGVNIAALKDPTKAYPHFDAPEFRYVLDEGLLDAIIITH
AALDHSGMLPYLFRYKLFDGPIYTTPPTRDLMTLLQQDFIEIQHMNGVEP
LYRPKDIKEVIKHTITLDYGEVRDIAPDIRLTLHNAGHILGSSIVHLHIG
NGLHNIAITGDFKFIPTRLFEPAVSRFPRLETLVMESTYGGSNDYQMPRE
EAEKRLIEVIHQTLKRGGKVLIPAMAVGRAQEIMMVLEEYARVGGIEVPI
YLDGMIWEATAIHTAYPEYLSKHIREQIFHEGYNPFLNPIFKSVANSRER
QDIIDSGEPAIIIATSGMLVGGPSVEYFKQLAPDPKNSIIFVSYQAEGTL
GRQVQRGLREIPIVGEDGRTEVINVNMEVHTIDGFSGAADRRELMSYVAR
VRPRPERIITVHGEAHKCLDLSSSIHKKFGISTRAPNNLDAIRLK
3D structure
PDB9bcu Structural basis of archaeal FttA-dependent transcription termination
ChainJ
Resolution2.2 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna J V197 N218 I219 A220 L256 D257 D291 I295 M428 A429 T518 S519 M521 G524 G525 P526 E550 V194 N215 I216 A217 L253 D254 D288 I292 M425 A426 T515 S516 M518 G521 G522 P523 E547
BS02 ZN J D257 H258 D364 H615 D254 H255 D361 H612
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003723 RNA binding
GO:0004519 endonuclease activity
GO:0004521 RNA endonuclease activity
GO:0004527 exonuclease activity
GO:0046872 metal ion binding
Biological Process
GO:0006353 DNA-templated transcription termination

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Molecular Function
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Biological Process
External links
PDB RCSB:9bcu, PDBe:9bcu, PDBj:9bcu
PDBsum9bcu
PubMed
UniProtQ5JH24|FTTA_THEKO Transcription termination factor FttA (Gene Name=fttA)

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