Structure of PDB 8vdu Chain J

Receptor sequence

>8vduJ (length=183) Species: 9606 (Homo sapiens) [Search protein sequence]

DIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYVDLERKETVWQLPLF
RRFRRFDPQFALTNIAVLKHNLNCVIKRSNSTAATNEVPEVTVFSKSPVT
LGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKI
SYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPE

3D structure

PDB

8vdu A structural basis of T cell cross-reactivity to a native and spliced self-antigens presented by HLA-DQ8

Chain

Resolution

3.5 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	J	Y9 R53 F54 N62 V65 L66 H68 N69 C72 R76	Y10 R55 F56 N64 V67 L68 H70 N71 C74 R78

External links

PDB	RCSB:8vdu, PDBe:8vdu, PDBj:8vdu
PDBsum	8vdu
PubMed	39074636
UniProt	Q30069

[Back to BioLiP]