Structure of PDB 8v84 Chain J

Receptor sequence
>8v84J (length=151) Species: 1247190 (Saccharomyces cerevisiae BY4741) [Search protein sequence]
NNTKAMKHALERVQLPWKKHSFQEHQSVTSETNTDEHIKDIYDDTERELA
FYKQSLDAVLVARDELKRLKVPFKRPLDYFAEMVKSDEHMDKIKGKLIEE
ASDKKAREEARRQRQLKKFGKQVQNATLQKRQLEKRETLEKIKSLKNKRK
H
3D structure
PDB8v84 The DEAD-box ATPase Dbp10/DDX54 initiates peptidyl transferase center formation during 60S ribosome biogenesis.
ChainJ
Resolution2.7 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna J A305 R309 L311 K316 Q319 R326 R331 A110 R114 L116 K121 Q124 R131 R136
Gene Ontology
Molecular Function
GO:0003729 mRNA binding
GO:0005515 protein binding
GO:0042802 identical protein binding
Biological Process
GO:0000280 nuclear division
GO:0006364 rRNA processing
GO:0042254 ribosome biogenesis
GO:0042273 ribosomal large subunit biogenesis
Cellular Component
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0030687 preribosome, large subunit precursor
GO:0034399 nuclear periphery

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Molecular Function
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Cellular Component
External links
PDB RCSB:8v84, PDBe:8v84, PDBj:8v84
PDBsum8v84
PubMed38632236
UniProtP36049|EBP2_YEAST rRNA-processing protein EBP2 (Gene Name=EBP2)

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