Structure of PDB 8v83 Chain J

Receptor sequence
>8v83J (length=151) Species: 1247190 (Saccharomyces cerevisiae BY4741) [Search protein sequence]
NNTKAMKHALERVQLPWKKHSFQEHQSVTSETNTDEHIKDIYDDTERELA
FYKQSLDAVLVARDELKRLKVPFKRPLDYFAEMVKSDEHMDKIKGKLIEE
ASDKKAREEARRQRQLKKFGKQVQNATLQKRQLEKRETLEKIKSLKNKRK
H
3D structure
PDB8v83 The DEAD-box ATPase Dbp10/DDX54 initiates peptidyl transferase center formation during 60S ribosome biogenesis.
ChainJ
Resolution2.53 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna J Y237 R302 A305 R306 Q308 R309 L311 K312 K316 Q319 N320 R326 Q327 R331 Y42 R107 A110 R111 Q113 R114 L116 K117 K121 Q124 N125 R131 Q132 R136
Gene Ontology
Molecular Function
GO:0003729 mRNA binding
GO:0005515 protein binding
GO:0042802 identical protein binding
Biological Process
GO:0000280 nuclear division
GO:0006364 rRNA processing
GO:0042254 ribosome biogenesis
GO:0042273 ribosomal large subunit biogenesis
Cellular Component
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0030687 preribosome, large subunit precursor
GO:0034399 nuclear periphery

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Cellular Component
External links
PDB RCSB:8v83, PDBe:8v83, PDBj:8v83
PDBsum8v83
PubMed38632236
UniProtP36049|EBP2_YEAST rRNA-processing protein EBP2 (Gene Name=EBP2)

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