Structure of PDB 8rjd Chain J

Receptor sequence

>8rjdJ (length=170) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

KENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTV
RSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGF
GIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRI
SKEEAMRWFQQKYDGIILPG

3D structure

PDB

8rjd UCSF ChimeraX: Meeting modern challenges in visualization and analysis.

Chain

Resolution

2.78574 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	J	K19 C21 N23 C25 G27 S51 A53 R54 S59 F60 I62 H71 N97 N98 T102 N104 G106 F107 G108 G127 L128 D129 Y131 K145	K12 C14 N16 C18 G20 S44 A46 R47 S52 F53 I55 H64 N90 N91 T95 N97 G99 F100 G101 G120 L121 D122 Y124 K138
BS02	rna	J	T56 R64	T49 R57
BS03	rna	J	N10 M12 R13 Q46 T47 V49 C72 T73 R75 P137 G138 S140 I141 K144 R146 R147 C150 I151 A153 K154 H155 R156	N3 M5 R6 Q39 T40 V42 C65 T66 R68 P130 G131 S133 I134 K137 R139 R140 C143 I144 A146 K147 H148 R149

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005634	nucleus
GO:0005730	nucleolus
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:8rjd, PDBe:8rjd, PDBj:8rjd
PDBsum	8rjd
PubMed	38896445
UniProt	G1TUB8\|RL11_RABIT Large ribosomal subunit protein uL5 (Gene Name=RPL11)

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