Structure of PDB 8pbc Chain J
Receptor sequence
>8pbcJ (length=311) Species:
9606
(Homo sapiens) [
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GPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAK
ADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPER
LLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLI
VDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVV
AQVDPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFA
INADGVGDAKD
3D structure
PDB
8pbc
Structural basis for stabilisation of the RAD51 nucleoprotein filament by BRCA2.
Chain
J
Resolution
2.61 Å
3D
structure
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Enzymatic activity
Enzyme Commision number
?
Interaction with ligand
Site
#
Ligand
Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01
peptide
J
F86 T88 E91
F66 T68 E71
BS02
peptide
J
Q145 E154 G155 K156 G179 L180 D184 N188 M210 S214
Q125 E134 G135 K136 G159 L160 D164 N168 M190 S194
BS03
dna
J
R229 R235 R241 V270 A271 V273 I287 G288 G289 N290
R209 R215 R221 V250 A251 V253 I259 G260 G261 N262
BS04
ATP
J
R130 G132 K133 T134 Q135 R170 I329
R110 G112 K113 T114 Q115 R150 I301
BS05
CA
J
T134 E163
T114 E143
BS06
CA
J
A293 H294 S296 D316
A265 H266 S268 D288
BS07
ATP
J
H294 S317 L320
H266 S289 L292
Gene Ontology
Molecular Function
GO:0000150
DNA strand exchange activity
GO:0000166
nucleotide binding
GO:0003677
DNA binding
GO:0003682
chromatin binding
GO:0003690
double-stranded DNA binding
GO:0003697
single-stranded DNA binding
GO:0005515
protein binding
GO:0005524
ATP binding
GO:0008094
ATP-dependent activity, acting on DNA
GO:0016887
ATP hydrolysis activity
GO:0017116
single-stranded DNA helicase activity
GO:0019899
enzyme binding
GO:0042802
identical protein binding
GO:0070182
DNA polymerase binding
GO:0140664
ATP-dependent DNA damage sensor activity
Biological Process
GO:0000722
telomere maintenance via recombination
GO:0000724
double-strand break repair via homologous recombination
GO:0000730
DNA recombinase assembly
GO:0006259
DNA metabolic process
GO:0006268
DNA unwinding involved in DNA replication
GO:0006281
DNA repair
GO:0006310
DNA recombination
GO:0006312
mitotic recombination
GO:0006974
DNA damage response
GO:0007131
reciprocal meiotic recombination
GO:0010569
regulation of double-strand break repair via homologous recombination
GO:0010833
telomere maintenance via telomere lengthening
GO:0031297
replication fork processing
GO:0032200
telomere organization
GO:0036297
interstrand cross-link repair
GO:0042148
DNA strand invasion
GO:0051106
positive regulation of DNA ligation
GO:0051321
meiotic cell cycle
GO:0070192
chromosome organization involved in meiotic cell cycle
GO:0071312
cellular response to alkaloid
GO:0071479
cellular response to ionizing radiation
GO:0072711
cellular response to hydroxyurea
GO:0072757
cellular response to camptothecin
GO:1990414
replication-born double-strand break repair via sister chromatid exchange
GO:1990426
mitotic recombination-dependent replication fork processing
GO:1990918
double-strand break repair involved in meiotic recombination
GO:2000001
regulation of DNA damage checkpoint
Cellular Component
GO:0000152
nuclear ubiquitin ligase complex
GO:0000228
nuclear chromosome
GO:0000781
chromosome, telomeric region
GO:0000785
chromatin
GO:0000793
condensed chromosome
GO:0000794
condensed nuclear chromosome
GO:0000800
lateral element
GO:0001673
male germ cell nucleus
GO:0005634
nucleus
GO:0005654
nucleoplasm
GO:0005694
chromosome
GO:0005730
nucleolus
GO:0005737
cytoplasm
GO:0005739
mitochondrion
GO:0005759
mitochondrial matrix
GO:0005813
centrosome
GO:0005829
cytosol
GO:0005856
cytoskeleton
GO:0016605
PML body
GO:0032991
protein-containing complex
GO:0035861
site of double-strand break
GO:0048471
perinuclear region of cytoplasm
GO:0099182
presynaptic intermediate filament cytoskeleton
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:8pbc
,
PDBe:8pbc
,
PDBj:8pbc
PDBsum
8pbc
PubMed
37919288
UniProt
Q06609
|RAD51_HUMAN DNA repair protein RAD51 homolog 1 (Gene Name=RAD51)
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