Structure of PDB 8ooo Chain J

Receptor sequence
>8oooJ (length=447) Species: 523845 (Methanothermococcus thermolithotrophicus DSM 2095) [Search protein sequence]
STVEQVLEYVKSNNVKFMRFQFVDILGVPKNVAFPIKAGEKGIEELRDVL
ENGLYFDGSSIEGFVGINESDMMLKPDLSTFSVLPWRPSEKSVARVICDV
YTTKGKPFEGDPRGCLKRVMEEFKKEFNGEYFVGPEPEFFLLKKDPHNPH
KYIPADDGGYFDLEPMDEAPDIRRDIVFALENLGFHVEASHHEVAPGQHE
VDFKFDDALKTADSVITFKTTIKTIAEQHGLKATFMPKPFFGMNGSGMHC
HQSIWLNGEPSFYDENAPYQLSETCMNYVAGILKHAKAIVAITNPTVNSY
KRLVPGYEAPVNIAWANSNRSAIIRVPAARGKGTRIEFRAPDPSCNPYLA
FTVMLAAGLDGVKNKLDAPEPVERNIFAMSEAEKKELGIESVPANLKAAL
DELENNDVLKNALGKHIFESFLEIKNAEWDSFRTSVTDWETTAYLKI
3D structure
PDB8ooo Differences in the regulation mechanisms of the glutamine synthetase from methanogenic archaea unveiled by structural investigations.
ChainJ
Resolution2.149 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 AKG J F18 R20 A34 R88 V94 F17 R19 A33 R87 V93
BS02 AKG J P171 R174 R175 S191 P170 R173 R174 S190
BS03 ATP J E137 E189 F204 K205 F206 H252 S254 R326 R336 E136 E188 F203 K204 F205 H251 S253 R325 R335
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 29 16:06:58 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8ooo', asym_id = 'J', title = 'Differences in the regulation mechanisms of the ...c archaea unveiled by structural investigations. '
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8ooo', asym_id='J', title='Differences in the regulation mechanisms of the ...c archaea unveiled by structural investigations. ')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0003824,0004356,0006542', uniprot = '', pdbid = '8ooo', asym_id = 'J'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003824,0004356,0006542', uniprot='', pdbid='8ooo', asym_id='J')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>