Structure of PDB 8ifm Chain J

Receptor sequence
>8ifmJ (length=415) Species: 1393122 (Thermoflavifilum thermophilum) [Search protein sequence]
RNKIFISHATPEDDDFTRWLSLKLIGLGYEVWCDILFLDKGVDFWSTIEK
EIRENTCKFLIVSSTAGNKREGVLKELAVATKVKKHLQDDMFIIPLAIDE
NLSYDDINIEIVRLNAIDFKKSWAKGLQDLLDAFEKQNVPDHSKSNLLYQ
QIFLHDKQAIEKEETYDSNWFPIISFPNELRFHRYDWRLPKQFDVRTLAF
PAIRYKEYLCTFAWEYDFIHQLPKTETYNGQESIRISTSDILSGRYDTDF
IRNYECQRLIVQLINKAFELRMKDKNVREYQMSKTFAYWIEKGKLEKDKF
EKIKLVGKQKNKYWHFGISAAGKLYPSPVLMVSSHIIFTMDGINLIKSKS
IQHSSRRKQGKNWWNDKWREKLLAFIRFLSDDQNAIYLNVGSEEKILISN
KPLKFFGKMSYVTPS
3D structure
PDB8ifm Target ssDNA activates the NADase activity of prokaryotic SPARTA immune system.
ChainJ
Resolution2.92 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna J K196 R209 K211 E260 M287 S288 H340 K354 H358 R361 R362 K191 R204 K206 E255 M282 S283 H335 K349 H353 R356 R357
BS02 dna J R201 R263 V266 Q267 N270 H358 S359 K366 W369 S420 R196 R258 V261 Q262 N265 H353 S354 K361 W364 S415
Gene Ontology
Biological Process
GO:0007165 signal transduction

View graph for
Biological Process
External links
PDB RCSB:8ifm, PDBe:8ifm, PDBj:8ifm
PDBsum8ifm
PubMed37932528
UniProtA0A1I7NFG5

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