Structure of PDB 8d3l Chain J

Receptor sequence
>8d3lJ (length=217) Species: 272558 (Halalkalibacterium halodurans C-125) [Search protein sequence]
SNEEDRYLMLSGLQHFQFCKRQWALIHIEQQWEENVRTIEGQHLHKKADQ
PFMKEKRGSKLTVRAMPIQSKNLQISGICDVVEFVQDSEGIELSGVSGSY
KAFPVEYKRGKPKKGDEDIVQLVAQAMCLEEMLVCRIDKGYLFYNEIKHR
VEVPITDALRDKVVQMAKEMHHYYENRHTPKVKTGPFCNNCSLQSICLPK
LMNKRSVKRYIEGRLSE
3D structure
PDB8d3l PAM binding ensures orientational integration during Cas4-Cas1-Cas2-mediated CRISPR adaptation.
ChainJ
Resolution3.49 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 3.1.12.1: 5' to 3' exodeoxyribonuclease (nucleoside 3'-phosphate-forming).
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna J M11 L12 S13 Q16 H17 F20 Q24 W34 R39 H47 G79 I80 K110 R111 K113 F189 N192 S194 M9 L10 S11 Q14 H15 F18 Q22 W32 R37 H45 G77 I78 K108 R109 K111 F187 N190 S192
BS02 SF4 J C21 C190 C193 C199 P201 C19 C188 C191 C197 P199
BS03 MN J D82 Y109 D80 Y107
Gene Ontology
Molecular Function
GO:0004527 exonuclease activity
GO:0046872 metal ion binding
GO:0051536 iron-sulfur cluster binding
Biological Process
GO:0051607 defense response to virus

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:8d3l, PDBe:8d3l, PDBj:8d3l
PDBsum8d3l
PubMed36272411
UniProtA0A4Y7WTW2

[Back to BioLiP]