Structure of PDB 7nfx Chain J

Receptor sequence

>7nfxJ (length=169) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

ENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVR
SFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFG
IQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRIS
KEEAMRWFQQKYDGIILPG

3D structure

PDB

7nfx Receptor compaction and GTPase rearrangement drive SRP-mediated cotranslational protein translocation into the ER.

Chain

Resolution

3.2 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	J	K19 C21 N23 C25 S51 A53 F60 I62 H71 N97 N98 S100 D101 T102 N104 G106 F107 G108 Q110 G127 L128 D129 Y131 K145	K11 C13 N15 C17 S43 A45 F52 I54 H63 N89 N90 S92 D93 T94 N96 G98 F99 G100 Q102 G119 L120 D121 Y123 K137
BS02	rna	J	M12 R13 Q46 T47 V49 C72 T73 R75 P137 G138 S140 I141 D143 K144 K145 C150 G152 A153 K154 H155	M4 R5 Q38 T39 V41 C64 T65 R67 P129 G130 S132 I133 D135 K136 K137 C142 G144 A145 K146 H147

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005634	nucleus
GO:0005730	nucleolus
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:7nfx, PDBe:7nfx, PDBj:7nfx
PDBsum	7nfx
PubMed	34020957
UniProt	G1TUB8\|RL11_RABIT Large ribosomal subunit protein uL5 (Gene Name=RPL11)

[Back to BioLiP]