Structure of PDB 6r7q Chain J

Receptor sequence

>6r7qJ (length=170) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

KENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTV
RSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGF
GIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRI
SKEEAMRWFQQKYDGIILPG

3D structure

PDB

6r7q Structural and mutational analysis of the ribosome-arresting human XBP1u.

Chain

Resolution

3.9 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	J	T56 R58	T49 R51
BS02	rna	J	K19 C21 N23 C25 S51 A53 R54 Y55 F60 I62 H71 N97 N98 S100 D101 T102 G106 F107 G108 G127 D129 Y131 K145	K12 C14 N16 C18 S44 A46 R47 Y48 F53 I55 H64 N90 N91 S93 D94 T95 G99 F100 G101 G120 D122 Y124 K138
BS03	rna	J	N10 M12 Q46 T47 V49 C72 T73 R75 G138 S140 I141 D143 K144 K145 C150 I151 A153 K154 H155 R156	N3 M5 Q39 T40 V42 C65 T66 R68 G131 S133 I134 D136 K137 K138 C143 I144 A146 K147 H148 R149

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005634	nucleus
GO:0005730	nucleolus
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:6r7q, PDBe:6r7q, PDBj:6r7q
PDBsum	6r7q
PubMed	31246176
UniProt	G1TUB8\|RL11_RABIT Large ribosomal subunit protein uL5 (Gene Name=RPL11)

[Back to BioLiP]