Structure of PDB 6chs Chain J

Receptor sequence
>6chsJ (length=550) Species: 759272 (Thermochaetoides thermophila DSM 1495) [Search protein sequence]
NEVGYDDIGGCRKQLAQIREMVELPLRHPQLFKSIGIKPPRGVLLYGPPG
TGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSP
AIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATN
RPNSIDPALRRFGRFDREVDIGIPDPTGRLEILQIHTKNMKLADDVDLEQ
IAAETHGYVGSDLAALCSEAAMQQIREKMDLIDLDEDTIDAEVLDSLGVT
MDNFRYALGVSNPSALREVAVVEVPNVRWEDIGGLEQVKQELKEQVQYPV
DHPEKFLKFGLSPSRGVLFYGPPGTGKTMLAKAVANECAANFISVKGPEL
LSMWFGESESNIRDIFDKARAAAPCVVFLDELDSIAKARGGSIGDAGGAS
DRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDPALCRPGRLDQLIYVPL
PDEAGRLSILKAQLRKTPVSKDVDLAYIASKTHGFSGADLAFITQRAVKL
AIKESIAAEIEPVPELTKRHFEEAMRDARRSVSDVEIRRYEAFAQQMKNA
3D structure
PDB6chs Structure of the Cdc48 ATPase with its ubiquitin-binding cofactor Ufd1-Npl4.
ChainJ
Resolution4.3 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 AGS J I222 P263 G264 T265 G266 K267 T268 L269 N364 I396 G424 S425 I8 P49 G50 T51 G52 K53 T54 L55 N150 I182 G210 S211
BS02 AGS J P537 G538 T539 G540 K541 T542 M543 I673 Q677 G701 A702 P323 G324 T325 G326 K327 T328 M329 I459 Q463 G487 A488
BS03 MG J T268 D320 T54 D106
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016787 hydrolase activity
GO:0016887 ATP hydrolysis activity
GO:0031593 polyubiquitin modification-dependent protein binding
Biological Process
GO:0030970 retrograde protein transport, ER to cytosol
GO:0051228 mitotic spindle disassembly
GO:0051301 cell division
GO:0097352 autophagosome maturation
Cellular Component
GO:0005634 nucleus
GO:0005829 cytosol
GO:0034098 VCP-NPL4-UFD1 AAA ATPase complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6chs, PDBe:6chs, PDBj:6chs
PDBsum6chs
PubMed29967539
UniProtG0S6Y2

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