Structure of PDB 5tx1 Chain J

Receptor sequence
>5tx1J (length=951) Species: 46928 (Human adenovirus 26) [Search protein sequence]
ATPSMMPQWAYMHIAGQDASEYLSPGLVQFARATDTYFSLGNKFRNPTVA
PTHDVTTDRSQRLTLRFVPVDREATTYLYKARFTLAVGDNRVLDMASTYF
DIRGVLDRGPSFKPYSGTAYNSLAPKGAPNPSQWETKEKQGTTGGVQQEK
DVTKTFGVAATGGINITNQGLLLGTDETAENGKKDIYADKTFQPEPQVGE
ENWQENEAFYGGRALKKDTKMKPCYGSFARPTNEKGGQAKFKPVNEGEQP
KDLDIDFAYFDVPGGSPPAGGSGEEYKADIILYTENVNLETPDTHVVYKP
GTSDNSSEINLVQQSMPNRPNYIGFRDNFVGLMYYNSTGNMGVLAGQASQ
LNAVVDLQDRNTELSYQLLLDSLGDRTRYFSMWNSAVDSYDPDVRIIENH
GVEDELPNYCFPLNGTGTNSTYQGVKITNGNDGAEESEWEKDDAISRQNQ
ICKGNVYAMEINLQANLWKSFLYSNVALYLPDSYKYTPANVKLPANTNTY
EYMNGRVVAPSLVDAYINIGARWSLDPMDNVNPFNHPRNAGLRYRSMLLG
NGRYVPFHIQVPQKFFAIKNLLLLPGSYTYEWNFRKDVNMILQSSLGNDL
RVDGASVRFDSVNLYATFFPMAHNTASTLEAMLRNDTHDQSFNDYLSAAN
MLYPIPAKATNVPISIPSRNWAAFRGWSFTRLKTKETPSLGSGFDPYFVY
SGSIPYLDGTFYLNHTFKKVSIMFDSSVSWPGNDRLLTPNEFEIKRSVDG
EGYNVAQCNMTKDWFLVQMLSHYNIGYQGFHVPEGYKDRMYSFFRNFQPM
SRQVVDEINYKDYKAVTLPFQHNNSGFTGYLAPTMRQGQPYPANFPYPLI
GQTAVPSVTQKKFLCDRVMWRIPFSSNFMSMGALTDLGQNMLYANSAHAL
DMTFEVDPMDEPTLLYLLFEVFDVVRVHQPHRGVIEAVYLRTPFSAGNAT
T
3D structure
PDB5tx1 Cryo-EM structure of human adenovirus D26 reveals the conservation of structural organization among human adenoviruses.
ChainJ
Resolution3.7 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide J D19 V50 A51 P52 H54 V56 L647 R676 F923 D18 V49 A50 P51 H53 V55 L646 R675 F922
BS02 peptide J N671 A938 Y940 S946 A947 G948 A950 T951 N670 A937 Y939 S945 A946 G947 A949 T950
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Biological Process
GO:0046718 symbiont entry into host cell
GO:0075521 microtubule-dependent intracellular transport of viral material towards nucleus
Cellular Component
GO:0019028 viral capsid
GO:0039623 T=25 icosahedral viral capsid
GO:0042025 host cell nucleus
GO:0043657 host cell

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5tx1, PDBe:5tx1, PDBj:5tx1
PDBsum5tx1
PubMed28508067
UniProtQ3S8B3

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