Structure of PDB 5lzy Chain J

Receptor sequence

>5lzyJ (length=170) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

KENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTV
RSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGF
GIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRI
SKEEAMRWFQQKYDGIILPG

3D structure

PDB

5lzy Decoding Mammalian Ribosome-mRNA States by Translational GTPase Complexes.

Chain

Resolution

3.99 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	J	T56 R64	T49 R57
BS02	rna	J	K19 N23 C25 S51 A53 S59 F60 H71 N97 N98 D101 T102 F107 G108 G127 L128 D129 Y131 K145	K12 N16 C18 S44 A46 S52 F53 H64 N90 N91 D94 T95 F100 G101 G120 L121 D122 Y124 K138
BS03	rna	J	N10 M12 R13 Q46 T47 V49 C72 T73 R75 G138 S140 I141 D143 K144 K145 R146 C150 I151 G152 A153 K154 H155 R156	N3 M5 R6 Q39 T40 V42 C65 T66 R68 G131 S133 I134 D136 K137 K138 R139 C143 I144 G145 A146 K147 H148 R149

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005634	nucleus
GO:0005730	nucleolus
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:5lzy, PDBe:5lzy, PDBj:5lzy
PDBsum	5lzy
PubMed	27863242
UniProt	G1TUB8\|RL11_RABIT Large ribosomal subunit protein uL5 (Gene Name=RPL11)

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