Structure of PDB 5jhd Chain J

Receptor sequence

>5jhdJ (length=239) Species: 9606 (Homo sapiens) [Search protein sequence]

GGITQSPKYLFRKEGQNVTLSCEQNLNHDAMYWYRQDPGQGLRLIYYSQI
VNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAFYLCASSIGVYGYT
FGSGTRLTVVEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH
VELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNP
RNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRA

3D structure

PDB

5jhd Broad TCR repertoire and diverse structural solutions for recognition of an immunodominant CD8(+) T cell epitope.

Chain

Resolution

2.46 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	J	D32 Q52 G98	D29 Q49 G95
BS02	EDT	J	K59 E64 G65 Y66 S67	K56 E61 G62 Y63 S64

External links

PDB	RCSB:5jhd, PDBe:5jhd, PDBj:5jhd
PDBsum	5jhd
PubMed	28250417

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