Structure of PDB 5fvc Chain J

Receptor sequence
>5fvcJ (length=364) Species: 162145 (human metapneumovirus) [Search protein sequence]
LQGIHLSDLSYKHAILKESQYTIKRDVGTTTAVTPSSLQQEITLLCGEIL
YAKHADYKYAAEIGIQYISTALGSERVQQILRNSGSEVQVVLTRTYSQML
DIHGVEKSWVEEIDKEARKTMATLLNIPQNQRPSAPDTPIILLCVGALIF
TKLASTIEVGLETTVRRANRVLSDALKRYPRMDIPKIARSFYDLFEQKVY
HRSLFIEYGKALGSSSTGSKAESLFVNIFMQAYGAGQTMLRWGVIARSSN
NIMLGHVSVQAELKQVTEVYDLVREMGPESGLLHLRQSPKAGLLSLANCP
NFASVVLGNASGLGIIGMYRGRVPNTELFSAAESYAKSLKESNKINFSSL
GLTDEEKEAAEHFL
3D structure
PDB5fvc Nucleocapsid assembly in pneumoviruses is regulated by conformational switching of the N protein.
ChainJ
Resolution4.17 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna J K171 S174 R185 R186 R189 L243 N246 Q250 G255 T257 W261 S314 M337 Y338 R339 G340 K152 S155 R166 R167 R170 L224 N227 Q231 G236 T238 W242 S295 M318 Y319 R320 G321
Gene Ontology
Cellular Component
GO:0019013 viral nucleocapsid
GO:0019029 helical viral capsid
GO:0030430 host cell cytoplasm
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:5fvc, PDBe:5fvc, PDBj:5fvc
PDBsum5fvc
PubMed26880565
UniProtQ91F57

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