Structure of PDB 5eew Chain J

Receptor sequence

>5eewJ (length=67) Species: 1422 (Geobacillus stearothermophilus)

SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIK
VRGKAYIQTRHGVIESE

3D structure

• PDB: 5eew RNA protects a nucleoprotein complex against radiation damage.
• Chain: J
• Resolution: 1.98 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	TRP	J	G23 H34 Q47 T49 T52 I55	G17 H28 Q41 T43 T46 I49
BS02	TRP	J	T25 R26 G27 T30 S53	T19 R20 G21 T24 S47

Gene Ontology

Molecular Function

• GO:0003723 RNA binding
• GO:0005515 protein binding
• GO:0042802 identical protein binding

Biological Process

• GO:0006353 DNA-templated transcription termination
• GO:0006355 regulation of DNA-templated transcription

External links

• PDB: RCSB:5eew, PDBe:5eew, PDBj:5eew
• PDBsum: 5eew
• PubMed: 27139628
• UniProt: Q9X6J6|MTRB_GEOSE Transcription attenuation protein MtrB (Gene Name=mtrB)