Structure of PDB 4pos Chain J

Receptor sequence
>4posJ (length=274) Species: 943908 (Human polyomavirus 9) [Search protein sequence]
GGVEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKAS
DNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVN
LHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDM
VTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTG
GATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSES
QNWRGLPRYFNVTLRKRVVKNPYP
3D structure
PDB4pos Crystallographic and glycan microarray analysis of human polyomavirus 9 VP1 identifies N-glycolyl neuraminic acid as a receptor candidate.
ChainJ
Resolution2.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GAL J S77 K78 S47 K48
BS02 SIA J L65 Y68 D71 Q133 G134 H274 N276 Y277 L35 Y38 D41 Q103 G104 H244 N246 Y247
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Cellular Component
GO:0019028 viral capsid

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Molecular Function
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Cellular Component
External links
PDB RCSB:4pos, PDBe:4pos, PDBj:4pos
PDBsum4pos
PubMed24648448
UniProtE9NQ90

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