Structure of PDB 4por Chain J

Receptor sequence
>4porJ (length=273) Species: 943908 (Human polyomavirus 9) [Search protein sequence]
GVEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASD
NPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNL
HQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMV
TIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGG
ATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQ
NWRGLPRYFNVTLRKRVVKNPYP
3D structure
PDB4por Crystallographic and glycan microarray analysis of human polyomavirus 9 VP1 identifies N-glycolyl neuraminic acid as a receptor candidate.
ChainJ
Resolution2.09 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GAL J S77 K78 S46 K47
BS02 SIA J L65 Y68 D71 Q133 G134 N276 Y277 L34 Y37 D40 Q102 G103 N245 Y246
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Cellular Component
GO:0019028 viral capsid

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Molecular Function
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Cellular Component
External links
PDB RCSB:4por, PDBe:4por, PDBj:4por
PDBsum4por
PubMed24648448
UniProtE9NQ90

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