Structure of PDB 2dcn Chain J

Receptor sequence
>2dcnJ (length=308) Species: 273063 (Sulfurisphaera tokodaii str. 7) [Search protein sequence]
AKLITLGEILIEFNALSPGPLRHVSYFEKHVAGSEANYCVAFIKQGNECG
IIAKVGDDEFGYNAIEWLRGQGVDVSHMKIDPSAPTGIFFIQRHYPVPLK
SESIYYRKGSAGSKLSPEDVDEEYVKSADLVHSSGITLAISSTAKEAVYK
AFEIASNRSFDTNIRLKLWSAEEAKREILKLLSKFHLKFLITDTDDSKII
LGESDPDKAAKAFSDYAEIIVMKLGPKGAIVYYDGKKYYSSGYQVPVEDV
TGAGDALGGTFLSLYYKGFEMEKALDYAIVASTLNVMIRGDQENLPTTKD
IETFLREM
3D structure
PDB2dcn Crystal structure of 2-keto-3-deoxygluconate kinase from Sulfolobus tokodaii complexed with 2-keto-6-phosphogluconate
ChainJ
Resolution2.25 Å
3D
structure
Catalytic site residues are labeled in the structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Catalytic site (original residue number in PDB) G253 A254 G255 D256
Catalytic site (residue number reindexed from 1) G252 A253 G254 D255
Enzyme Commision number 2.7.1.45: 2-dehydro-3-deoxygluconokinase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CKP J L11 G34 F90 Y106 R108 I137 R166 G253 D256 D292 L10 G33 F89 Y105 R107 I136 R165 G252 D255 D291
BS02 ADP J D194 K224 G226 P227 G229 G255 S283 V287 D193 K223 G225 P226 G228 G254 S282 V286
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0008673 2-dehydro-3-deoxygluconokinase activity
GO:0016301 kinase activity
Biological Process
GO:0016310 phosphorylation
GO:0046835 carbohydrate phosphorylation

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:2dcn, PDBe:2dcn, PDBj:2dcn
PDBsum2dcn
PubMed
UniProtQ96XN9|KDGK_SULTO 2-dehydro-3-deoxygluconokinase (Gene Name=kdgK)

[Back to BioLiP]