Structure of PDB 1rvt Chain J

Receptor sequence
>1rvtJ (length=324) Species: 11309 (unidentified influenza virus) [Search protein sequence]
DTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCRLGGIAPL
QLGKCNIAGWLLGNPECDLLLTVSSWSYIVETSNSDNGTCYPGDFIDYEE
LREQLSSVSSFEKFEIFPKTSSWPNHETTRGVTAACPYAGASSFYRNLLW
LVKKGNSYPKLSKSYVNNKGKEVLVLWGVHHPPTSTDQQSLYQNADAYVS
VGSSKYDRRFTPEIAARPKVRGQAGRMNYYWTLLEPGDTITFEATGNLVA
PRYAFALNRGSGSGIITSDAPVHDCDTKCQTPHGAINSSLPFQNIHPVTI
GECPKYVKSTKLRMATGLRNIPAR
3D structure
PDB1rvt The structure and receptor binding properties of the 1918 influenza hemagglutinin.
ChainJ
Resolution2.5 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GAL J K222 G225 K219 G222
BS02 SIA J Y95 V135 T136 A137 W153 H183 L194 Q226 Y91 V132 T133 A134 W150 H180 L191 Q223
Gene Ontology
Molecular Function
GO:0046789 host cell surface receptor binding
Biological Process
GO:0019064 fusion of virus membrane with host plasma membrane
Cellular Component
GO:0019031 viral envelope

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:1rvt, PDBe:1rvt, PDBj:1rvt
PDBsum1rvt
PubMed14764886
UniProtQ82500

[Back to BioLiP]