Structure of PDB 8v87 Chain I

Receptor sequence
>8v87I (length=526) Species: 1247190 (Saccharomyces cerevisiae BY4741) [Search protein sequence]
TEEKILQLKEDIADLVTKVMEEPEENTAALGRLCKMVESKNPNTCKFSML
ALVPVFKSIIPGYRIRPLTETEKKEKVSKEVSKLRNFEQALVYNYKNYVG
RLQSLSKTPSNAAPIQVSLGILATQAAKELISTASHFNFRTDIFTLLLRR
ICKPRISTDPTSIQIIQTFETLLNEDEEGSISFEILRIFNKILKTRNFNI
EESVLNMLLSLDVLHDYDPNTKLKLKKKDRVHLSKKQRKARKEMQQIEEE
MRNAEQAVSAEERERNQSEILKIVFTIYLNILKNNAKTLIGSVLEGLTKF
GNMANFDLLGDFLEVMKELISDTEFDNLSSAEVRKALLCIVSAFSLISNT
QYMKVNVDLSKFVDGLYALLPYICLDADIELSYRSLRLADPLNNEIIKPS
VNVSTKAELLLKALDHVFFRSKSGTKERATAFTKRLYMCISHTPEKTSIA
ILKFIDKLMNRYPEISGLYSSEDRIGNGHFIMEADNPSRSNPEAATLWDN
ALLEKHYCPVVTKGLRSLSSRSKECS
3D structure
PDB8v87 The DEAD-box ATPase Dbp10/DDX54 initiates peptidyl transferase center formation during 60S ribosome biogenesis.
ChainI
Resolution2.66 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna I K360 K363 R366 V367 L369 S370 K371 K372 R374 K375 R377 K378 Q381 K224 K227 R230 V231 L233 S234 K235 K236 R238 K239 R241 K242 Q245
Gene Ontology
Molecular Function
GO:0003682 chromatin binding
GO:0005515 protein binding
Biological Process
GO:0006260 DNA replication
GO:0006267 pre-replicative complex assembly involved in nuclear cell cycle DNA replication
GO:0006270 DNA replication initiation
GO:0006364 rRNA processing
GO:0042254 ribosome biogenesis
GO:0042273 ribosomal large subunit biogenesis
GO:0051301 cell division
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005656 nuclear pre-replicative complex
GO:0005730 nucleolus
GO:0030691 Noc2p-Noc3p complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8v87, PDBe:8v87, PDBj:8v87
PDBsum8v87
PubMed38632236
UniProtQ07896|NOC3_YEAST Nucleolar complex-associated protein 3 (Gene Name=NOC3)

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