Structure of PDB 8qyf Chain I

Receptor sequence
>8qyfI (length=179) Species: 1282 (Staphylococcus epidermidis) [Search protein sequence]
IPTVYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLY
INSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRF
ALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIE
KIQQDTDRDNFLTAAEAKEYGLIDEVMEP
3D structure
PDB8qyf Molecular insights into the dynamic modulation of bacterial ClpP function and oligomerization by peptidomimetic boronate compounds
ChainI
Resolution2.33 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.4.21.92: endopeptidase Clp.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 6V8 I G68 G69 V71 S98 M99 H123 Q124 P125 L126 G127 G55 G56 V58 S85 M86 H110 Q111 P112 L113 G114
Gene Ontology
Molecular Function
GO:0004176 ATP-dependent peptidase activity
GO:0004252 serine-type endopeptidase activity
GO:0008236 serine-type peptidase activity
GO:0051117 ATPase binding
Biological Process
GO:0006508 proteolysis
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins
Cellular Component
GO:0005737 cytoplasm
GO:0009368 endopeptidase Clp complex

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Biological Process
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Cellular Component
External links
PDB RCSB:8qyf, PDBe:8qyf, PDBj:8qyf
PDBsum8qyf
PubMed38296985
UniProtQ5HQW0|CLPP_STAEQ ATP-dependent Clp protease proteolytic subunit (Gene Name=clpP)

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