Structure of PDB 8qbd Chain I

Receptor sequence
>8qbdI (length=271) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]
MHRTYSLRNSRAPTASQLQNPPPPPSTTKGRFFGKGGLAYSFRRSAAGAF
GPELSRKLSQLVKIEKNVLRSMELTANERRDAAKQLSIWGLENDDDVSDI
TDKLGVLIYEVSELDDQFIDRYDQYRLTLKSIRDIEGSVQPSRDRKDKIT
DKIAYLKYKDPQSPKIEVLEQELVRAEAESLVAEAQLSNITRSKLRAAFN
YQFDSIIEHSEKIALIAGYGKALLELLDDSPVTPGETRPAYDGYEASKQI
IIDAESALNEWTLDSAQVKPT
3D structure
PDB8qbd Real-space refinement in PHENIX for cryo-EM and crystallography.
ChainI
Resolution3.61 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 I3P I K63 R126 K130 K63 R126 K130
BS02 P5S I A39 R43 K63 K66 R70 A39 R43 K63 K66 R70
Gene Ontology
Molecular Function
GO:0005515 protein binding
GO:0008289 lipid binding
Biological Process
GO:0006897 endocytosis
GO:0008104 protein localization
GO:0070941 eisosome assembly
GO:0097446 protein localization to eisosome filament
Cellular Component
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005741 mitochondrial outer membrane
GO:0005811 lipid droplet
GO:0005886 plasma membrane
GO:0032126 eisosome
GO:0036286 eisosome filament
GO:0071944 cell periphery

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8qbd, PDBe:8qbd, PDBj:8qbd
PDBsum8qbd
PubMed39048819
UniProtP53252|PIL1_YEAST Sphingolipid long chain base-responsive protein PIL1 (Gene Name=PIL1)

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