Structure of PDB 8p0k Chain I

Receptor sequence
>8p0kI (length=276) Species: 10245 (Vaccinia virus) [Search protein sequence]
MFEPVPDLNLEASVELGEVNIDQTTPMIKEAHRSKDDERKLALRFFLQRL
YFLDHREIHYLFRCVDAVKDVTITKKNNIIVAPYIALLTIASKGCKLTET
MIEAFFPELYNEHSKKFKFNSQVSIIQEKLGYQFGNYHVYDFEPYYSTVA
LAIRDEHSSGIFNIRQESYLVSSLSEITYRFYLINLKSDLVQWSASTGAV
INQMVNTVLITVYEKLQLVIENDSQFTCSLAVESKLPIKLLKDRNELFTK
FINELKKTSSFKISKRDKDTLLKYFT
3D structure
PDB8p0k Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex (CASP target)
ChainI
Resolution2.64 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna I K88 N89 S206 K76 N77 S194
BS02 dna I K87 K88 S126 K128 F129 K75 K76 S114 K116 F117
External links
PDB RCSB:8p0k, PDBe:8p0k, PDBj:8p0k
PDBsum8p0k
PubMed
UniProtP20986|VTF3S_VACCC Intermediate transcription factor 3 small subunit (Gene Name=OPG134)

[Back to BioLiP]