Structure of PDB 8p0j Chain I

Receptor sequence
>8p0jI (length=276) Species: 10245 (Vaccinia virus) [Search protein sequence]
MFEPVPDLNLEASVELGEVNIDQTTPMIKEAHRSKDDERKLALRFFLQRL
YFLDHREIHYLFRCVDAVKDVTITKKNNIIVAPYIALLTIASKGCKLTET
MIEAFFPELYNEHSKKFKFNSQVSIIQEKLGYQFGNYHVYDFEPYYSTVA
LAIRDEHSSGIFNIRQESYLVSSLSEITYRFYLINLKSDLVQWSASTGAV
INQMVNTVLITVYEKLQLVIENDSQFTCSLAVESKLPIKLLKDRNELFTK
FINELKKTSSFKISKRDKDTLLKYFT
3D structure
PDB8p0j Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex (CASP target)
ChainI
Resolution2.39 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna I K47 K88 N89 K127 S206 K35 K76 N77 K115 S194
BS02 dna I K87 K88 S126 K128 F129 S276 K75 K76 S114 K116 F117 S264
External links
PDB RCSB:8p0j, PDBe:8p0j, PDBj:8p0j
PDBsum8p0j
PubMed
UniProtP20986|VTF3S_VACCC Intermediate transcription factor 3 small subunit (Gene Name=OPG134)

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