Structure of PDB 8jw0 Chain I

Receptor sequence
>8jw0I (length=194) Species: 2961 (Amphidinium carterae) [Search protein sequence]
KETSASVPFLPKPKNLAGWVGGETEFDPIGFSNWFDMKWLREAELKHGRV
CMMATVGFVLQPYIGAYPGVEMPADSLQAVYAAPSEAWFAFIFAAGYIES
SSYNGKITQLNMFEDSDRVPGNLGWGSTRLEGMSKEESELMQLKELKNGR
LAMLAFSGMVHHNIVVKGALFPLVPDGWTGPEPWAVGSIMNNMG
3D structure
PDB8jw0 Structures and organizations of PSI-AcpPCI supercomplexes from red tidal and coral symbiotic photosynthetic dinoflagellates.
ChainI
Resolution2.9 Å
3D
structure
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Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 CLA I I189 N192 I189 N192
BS02 CLA I W184 G187 S188 I189 W184 G187 S188 I189
BS03 DD6 I S85 F89 S85 F89
BS04 CLA I S188 I189 M190 S188 I189 M190
BS05 DD6 I K147 R150 L151 L154 W184 K147 R150 L151 L154 W184
BS06 DD6 I M53 G65 A66 Y67 P68 F91 E99 M53 G65 A66 Y67 P68 F91 E99
BS07 DD6 I F26 D27 P28 I29 C51 A54 Q61 S76 V80 M153 F156 F26 D27 P28 I29 C51 A54 Q61 S76 V80 M153 F156
BS08 DD6 I M52 R129 L151 A152 A155 M159 M52 R129 L151 A152 A155 M159
BS09 DD6 I Y81 F156 S157 V160 H161 Y81 F156 S157 V160 H161
BS10 CLA I A5 S6 P8 F9 A5 S6 P8 F9
BS11 CLA I K144 K147 L151 K144 K147 L151
BS12 CLA I L16 G21 G22 T24 E25 F26 D27 F31 L40 R41 E44 R150 M153 L16 G21 G22 T24 E25 F26 D27 F31 L40 R41 E44 R150 M153
BS13 CLA I F35 W39 L40 H47 F35 W39 L40 H47
BS14 CLA I M53 A54 G57 Q61 A66 M72 A79 A83 W88 F91 A94 W125 M53 A54 G57 Q61 A66 M72 A79 A83 W88 F91 A94 W125
BS15 CLA I I92 F93 G96 Y97 S100 N104 G105 I107 I92 F93 G96 Y97 S100 N104 G105 I107
BS16 CLA I W39 E42 A43 K46 H47 F91 E99 I107 W39 E42 A43 K46 H47 F91 E99 I107
BS17 CLA I R49 M52 G121 N122 L123 W125 G126 S127 R129 L130 M141 Q142 E145 N148 R49 M52 G121 N122 L123 W125 G126 S127 R129 L130 M141 Q142 E145 N148
BS18 KC1 I M141 K144 N148 L151 M141 K144 N148 L151
BS19 CLA I L154 S157 G158 H161 H162 V165 L154 S157 G158 H161 H162 V165
BS20 CLA I H161 I164 W184 H161 I164 W184
BS21 DD6 I T179 G180 T179 G180
Gene Ontology
--> -->
 
 
UnboundLocalError
Python 3.6.8: /usr/bin/python3
Sat Nov 16 00:41:18 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8jw0', asym_id = 'I', title = 'Structures and organizations of PSI-AcpPCI super...d coral symbiotic photosynthetic dinoflagellates.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8jw0', asym_id='I', title='Structures and organizations of PSI-AcpPCI super...d coral symbiotic photosynthetic dinoflagellates.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0009765,0016020', uniprot = '', pdbid = '8jw0', asym_id = 'I'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0009765,0016020', uniprot='', pdbid='8jw0', asym_id='I')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>