Structure of PDB 8bvh Chain I

Receptor sequence
>8bvhI (length=262) Species: 287 (Pseudomonas aeruginosa) [Search protein sequence]
GPAMRIISVNVNGIQAAAERGLLSWLQAQNADVICLQDTRASAFDLDDPS
FQLDGYFLYACDAELPEQGGVALYSRLQPKAVISGLGFETADRYGRYLQA
DFDKVSIATLLLPSGQSGDESLNQKFKFMDDFTHYLSKQRRKRREYIYCG
SLYVAHQKMDVKNWRECQQMPGFLAPERAWLDEVFGNLGYADALREVSRE
GDQFSWWPDSEQAEMLNLGWRFDYQVLTPGLRRFVRNAKLPRQPRFSQHA
PLIVDYDWQLSI
3D structure
PDB8bvh Translational regulation by Hfq-Crc assemblies emerges from polymorphic ribonucleoprotein folding.
ChainI
Resolution3.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.1.11.2: exodeoxyribonuclease III.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna I K77 A78 K139 R140 R141 K80 A81 K142 R143 R144
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0004518 nuclease activity
GO:0008081 phosphoric diester hydrolase activity
GO:0008311 double-stranded DNA 3'-5' DNA exonuclease activity
GO:0046872 metal ion binding
Biological Process
GO:0006281 DNA repair
GO:0006284 base-excision repair
GO:0009372 quorum sensing
GO:0043609 regulation of carbon utilization
GO:1900190 regulation of single-species biofilm formation

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Molecular Function
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Biological Process
External links
PDB RCSB:8bvh, PDBe:8bvh, PDBj:8bvh
PDBsum8bvh
PubMed36504222
UniProtG3XDB0

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