Structure of PDB 8bhj Chain I

Receptor sequence

>8bhjI (length=144) Species: 83333 (Escherichia coli K-12)

MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGF
EGGQMPLYRRLPKFGFTSRKAAITAEIRLSDLAKVEGGVVDLNTLKAANI
IGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE

3D structure

• PDB: 8bhj Modulation of translational decoding by m 6 A modification of mRNA.
• Chain: I
• Resolution: 2.81 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	I	N4 G11 K13 K14 R18 G20 R21 G22 G24 K29 G32 R33 G34 K36 Q38 K39 R41 S42 G43 R47 G52 Q54 M55 R59 R60 K63 F66 R69 E76 R78 N99 K109 I111 T128	N4 G11 K13 K14 R18 G20 R21 G22 G24 K29 G32 R33 G34 K36 Q38 K39 R41 S42 G43 R47 G52 Q54 M55 R59 R60 K63 F66 R69 E76 R78 N99 K109 I111 T128

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome
• GO:0005515 protein binding
• GO:0019843 rRNA binding

Biological Process

• GO:0002181 cytoplasmic translation
• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005840 ribosome
• GO:0015934 large ribosomal subunit
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:8bhj, PDBe:8bhj, PDBj:8bhj
• PDBsum: 8bhj
• PubMed: 37553384
• UniProt: P02413|RL15_ECOLI Large ribosomal subunit protein uL15 (Gene Name=rplO)