Structure of PDB 8bd5 Chain I

Receptor sequence

>8bd5I (length=260) Species: 34078 (Scytonema hofmannii) [Search protein sequence]

DDEWLQAEIARLKGKSIVPLQQVKTLHDWLDGKRKARKSCRVVGESRTGK
TVACDAYRYRHKPQQEAGRPPTVPVVYIRPHQKCGPKDLFKKITEYLKYR
VTKGTVSDFRDRTIEVLKGCGVEMLIIDEADRLKPETFADVRDIAEDLGI
AVVLVGTDRLDAVIKRDEQVLERFRAHLRFGKLSGEDFKNTVEMWEQMVL
KLPVSSNLKSKEMLRILTSATEGYIGRLDEILREAAIRSLSRGLKKIDKA
VLQEVAKEYK

3D structure

PDB

8bd5 Structural basis for the assembly of the type V CRISPR-associated transposon complex.

Chain

Resolution

3.3 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	I	G84 R85	G68 R69
BS02	ATP	I	K31 V34 E61 S62 R63 T64 G65 K66 T67 V68 W211 I241 G242 D245	K15 V18 E45 S46 R47 T48 G49 K50 T51 V52 W195 I225 G226 D229

External links

PDB	RCSB:8bd5, PDBe:8bd5, PDBj:8bd5
PDBsum	8bd5
PubMed	36435179
UniProt	A0A8J0PCL3

[Back to BioLiP]