Structure of PDB 6yan Chain I

Receptor sequence

>6yanI (length=237) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVV
RISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGC
IVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKE
DDVRQYVVRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTK
KNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSL

3D structure

PDB

6yan Structural Insights into the Mammalian Late-Stage Initiation Complexes.

Chain

Resolution

3.48 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	I	N4 P8 Q13 L15 R31 S53 N56 Q59 G60 Q65 G66 R72 R74 L75 L76 H81 C83 Y84 R85 R87 R88 E91 R92 R94 K95 N110 R131 R132 L133 G134 K136 R137 S139 R140 K143 V153 R154 R159 K160 L162 E165 K167 K168 R170 T171 K172 A173 P174 K175 I176 Q177 R178 L179 V180 T181 R183 Q186 H187 K188 R189 R190 R191 K195 R198 N202 R224 K230 S236 L237	N4 P8 Q13 L15 R31 S53 N56 Q59 G60 Q65 G66 R72 R74 L75 L76 H81 C83 Y84 R85 R87 R88 E91 R92 R94 K95 N110 R131 R132 L133 G134 K136 R137 S139 R140 K143 V153 R154 R159 K160 L162 E165 K167 K168 R170 T171 K172 A173 P174 K175 I176 Q177 R178 L179 V180 T181 R183 Q186 H187 K188 R189 R190 R191 K195 R198 N202 R224 K230 S236 L237

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:1990904	ribonucleoprotein complex

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:6yan, PDBe:6yan, PDBj:6yan
PDBsum	6yan
PubMed	32268096
UniProt	A0A5K1UJS7

[Back to BioLiP]