Structure of PDB 6ftj Chain I

Receptor sequence

>6ftjI (length=204) Species: 9986 (Oryctolagus cuniculus)

GRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGH
MVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINK
MLTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVVEALRRAKFKFP
GRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPLDKWR
ALHS

3D structure

• PDB: 6ftj Structural basis for coupling protein transport and N-glycosylation at the mammalian endoplasmic reticulum.
• Chain: I
• Resolution: 4.7 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	I	R3 R4 P5 A6 R7 C8 K13 N14 K15 P16 Y17 F22 R24 K30 F34 D35 K39 K40 S61 E63 A64 A67 K74 K82 R88 R90 H92 F94 R98 N100 M115 R116 G117 A118 F119 G120 Q133 F157 K158 P160 D193 G194 K198	R2 R3 P4 A5 R6 C7 K12 N13 K14 P15 Y16 F21 R23 K29 F33 D34 K38 K39 S60 E62 A63 A66 K73 K81 R87 R89 H91 F93 R97 N99 M105 R106 G107 A108 F109 G110 Q123 F147 K148 P150 D183 G184 K188
BS02	rna	I	Y11 E56 Y57 I131 Y199 N202 R203 G204 L206	Y10 E55 Y56 I121 Y189 N192 R193 G194 L196

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0000027 ribosomal large subunit assembly
• GO:0006412 translation
• GO:0006417 regulation of translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:6ftj, PDBe:6ftj, PDBj:6ftj
• PDBsum: 6ftj
• PubMed: 29519914
• UniProt: B7NZQ2|RL10_RABIT Large ribosomal subunit protein uL16 (Gene Name=RPL10)