Structure of PDB 6dmf Chain I

Receptor sequence
>6dmfI (length=510) Species: 411476 (Bacteroides ovatus ATCC 8483) [Search protein sequence]
DPNAQLTTAQLQTYGDLSMMEIYRNYHYAFTQQLMGCWNTTNYGGRHTLD
NNEMSRIWTSFYTQSLKNIIDAQYRTAAEKVNINSVLRIYRVYLMSIITD
TYGDAPFSEAGFNPKYDKQEDIYNAFFLELEDAVNKIDPTKDKVTGDLIY
AGDVTKWQQLANSLRLRFAMRISSVNPTKAQTEFENALAANGGVITDASS
DALIKYMTIAFSFGQEAYSDYRGNSLSQLLFGNDPANNPSYLCSTFFNQL
YNSGDPRTFKISRCYYDGLMSATSPDNRVDITQEMIEKGIAFSPRDPGAY
SWEPWPTGYDSDICAELAVNNPSVTATMAREVEPKLANNFLKSDNPGVVM
TSAEVKFLMAEATVKKWNVGSVSAEDLYKQGVRAAIDFLTDNYGCTATTD
AEFDAFIQDKGAFGHTDNQKLEAINTQAWILHFTNPAECWANVRRSGYPK
LKSPAEYGFGQYLTGGTEIPVRLCYPVLESSYNKKSYNEAIERMGGTDNW
HSLLWWDTEN
3D structure
PDB6dmf Surface glycan-binding proteins are essential for cereal beta-glucan utilization by the human gut symbiont Bacteroides ovatus.
ChainI
Resolution2.4 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 BGC I E60 N78 N281 E21 N39 N233
BS02 BGC I W77 D282 W38 D234
BS03 MG I R492 D555 E557 R444 D507 E509
External links