Structure of PDB 6db7 Chain I

Receptor sequence

>6db7I (length=233) Species: 9606 (Homo sapiens) [Search protein sequence]

QVQLVQSGAEVKKPGASVKVSCEASGYTFAKFAIHWVRQAPRQGLEWMGW
INGDDGKTEYSQKFQDRVTMTRDTSASTVYMELSSLRSEDTALYYCARAM
YPDTVTGNDNPAPPPFEGDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTS
GGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVV
TVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKS

3D structure

PDB

6db7 Structural Comparison of Human Anti-HIV-1 gp120 V3 Monoclonal Antibodies of the Same Gene Usage Induced by Vaccination and Chronic Infection.

Chain

Resolution

2.213 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	I	W50 N52 D53 D54 K56 Y97 P98 D99 P100G A100H P100I P100J	W50 N52 D54 D55 K57 Y101 P102 D103 P111 A112 P113 P114

External links

PDB	RCSB:6db7, PDBe:6db7, PDBj:6db7
PDBsum	6db7
PubMed	29997214

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