Structure of PDB 6db5 Chain I

Receptor sequence

>6db5I (length=228) Species: 9606 (Homo sapiens) [Search protein sequence]

QVQLVQSGAEVKKPGASVKVSCKASGYTFTNYAIHWVRQAPGHRLEWMGW
INGGDGNTKYSQKLQGRVTITRDTSASTAYMELSSLRSEDSAVYYCMRAY
YYGSRGLVDDALDVWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAAL
GCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSS
LGTQTYICNVNHKPSNTKVDKKVEPKSC

3D structure

PDB

6db5 Structural Comparison of Human Anti-HIV-1 gp120 V3 Monoclonal Antibodies of the Same Gene Usage Induced by Vaccination and Chronic Infection.

Chain

Resolution

2.599 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	I	W50 N52 N56 Y97 G99 S100 G100B	W50 N52 N57 Y101 G103 S104 G106

External links

PDB	RCSB:6db5, PDBe:6db5, PDBj:6db5
PDBsum	6db5
PubMed	29997214

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