Structure of PDB 5v6l Chain I

Receptor sequence

>5v6lI (length=218) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

QLVESGGGLVKPGGTLTLTCTASGFSFSSGFFMCWVRQAPGKGLEWIGCI
YGGSNDNTYYANWAKGRFTISKTSSTTVTLQMTSRTAADTATYFCARDAG
TSGYIAYNLWGPGTLVTVSSGQPKAPSVFPLAPCCGDTPSSTVTLGCLVK
GYLPEPVTVTWNSGTLTNGVRTFPSVRQSSGLYSLSSVVSVTSSSQPVTC
NVAHPATNTKVDKTVAPS

3D structure

PDB

5v6l Increased epitope complexity correlated with antibody affinity maturation and a novel binding mode revealed by structures of rabbit antibodies against the third variable loop (V3) of HIV-1 gp120.

Chain

Resolution

2.549 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	I	G32 F34 Y52 N54 Y58 D95 G97 S99 G100 Y100A I100B	G30 F32 Y51 N55 Y59 D98 G100 S102 G103 Y104 I105

External links

PDB	RCSB:5v6l, PDBe:5v6l, PDBj:5v6l
PDBsum	5v6l
PubMed	29343576

[Back to BioLiP]