Structure of PDB 5iio Chain I

Receptor sequence
>5iioI (length=326) Species: 9606 (Homo sapiens) [Search protein sequence]
TNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEA
CSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTA
QMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTV
QKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLD
SLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEF
ACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGR
VLPTPTEKDVFRLLGLPYREPAERDW
3D structure
PDB5iio A fidelity mechanism in DNA polymerase lambda promotes error-free bypass of 8-oxo-dG.
ChainI
Resolution2.08 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) D427 D429 D490
Catalytic site (residue number reindexed from 1) D178 D180 D241
Enzyme Commision number 2.7.7.7: DNA-directed DNA polymerase.
4.2.99.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna I W274 E465 E466 N467 Y505 R517 K521 W25 E216 E217 N218 Y256 R268 K272
BS02 dna I W342 G343 A344 G345 K347 T348 K472 W93 G94 A95 G96 K98 T99 K223
BS03 dna I W274 R275 G278 Y279 P303 G304 G306 R308 M309 K312 W25 R26 G29 Y30 P54 G55 G57 R59 M60 K63
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003887 DNA-directed DNA polymerase activity
GO:0016779 nucleotidyltransferase activity
GO:0034061 DNA polymerase activity
Biological Process
GO:0006281 DNA repair

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Molecular Function
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Biological Process
External links
PDB RCSB:5iio, PDBe:5iio, PDBj:5iio
PDBsum5iio
PubMed27481934
UniProtQ9UGP5|DPOLL_HUMAN DNA polymerase lambda (Gene Name=POLL)

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